Last updated on 2025-11-07 13:50:55 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.763, system: 0.086, elapsed: 2.570 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.982, system: 0.410, elapsed: 18.783 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.023, elapsed: 0.443 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.134, system: 0.317, elapsed: 7.819 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.004, elapsed: 0.333 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.822, system: 0.875, elapsed: 30.975 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.578, system: 0.041, elapsed: 2.885 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.599, system: 0.142, elapsed: 19.225 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.014, elapsed: 0.386 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.894, system: 0.175, elapsed: 7.026 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.335 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.002, system: 0.400, elapsed: 30.978 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.630, system: 0.034, elapsed: 3.156 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.511, system: 0.070, elapsed: 18.024 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.012, elapsed: 0.322 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.896, system: 0.189, elapsed: 7.684 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.349 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.230, system: 0.234, elapsed: 1.648 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.282, system: 0.566, elapsed: 32.415 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.565, system: 0.033, elapsed: 2.778 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.542, system: 0.067, elapsed: 17.952 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.351 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.891, system: 0.185, elapsed: 7.392 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.312 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.843, system: 0.494, elapsed: 21.772 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.895, system: 0.830, elapsed: 51.893 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/144s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.767, system: 0.074, elapsed: 3.438 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.712, system: 0.215, elapsed: 17.967 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.018, elapsed: 0.336 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.775, system: 0.209, elapsed: 5.920 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.012, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.197, system: 0.559, elapsed: 29.016 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.751, system: 0.083, elapsed: 2.552 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.003, system: 0.394, elapsed: 19.162 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.012, elapsed: 0.396 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.881, system: 0.188, elapsed: 7.618 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.008, elapsed: 0.312 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.553, system: 0.733, elapsed: 31.173 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.682, system: 0.051, elapsed: 2.622 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.522, system: 0.100, elapsed: 17.481 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.353 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.717, system: 0.178, elapsed: 7.086 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.015, elapsed: 0.330 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.114, system: 0.270, elapsed: 1.112 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.055, system: 0.659, elapsed: 30.137 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.555, system: 0.032, elapsed: 2.655 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.643, system: 0.080, elapsed: 18.617 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.350 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.600, system: 0.161, elapsed: 5.215 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.004, elapsed: 0.313 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.757, system: 0.478, elapsed: 16.657 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.581, system: 0.796, elapsed: 44.942 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64