CRAN Package Check Results for Maintainer Kevin R. Coombes <krc at silicovore.com>

CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2025-06-21 15:49:58 CEST.

Package	ERROR	OK
BimodalIndex		13
ClassComparison		13
ClassDiscovery		13
CloneSeeker		13
CrossValidate		13
GenAlgo		13
integIRTy		13
Mercator		13
Modeler		13
NameNeedle		13
NewmanOmics		13
oompaBase		13
oompaData		13
PCDimension		13
plasma		13
Polychrome		13
PreProcess		13
RCytoGPS		13
RPointCloud		13
SIBERG		13
SillyPutty		13
TailRank		13
Thresher		13
Umpire		13
WayFindR	2	11

Package GenAlgo

Current CRAN status: OK: 13

Package Modeler

Current CRAN status: OK: 13

Package plasma

Current CRAN status: OK: 13

Package SIBERG

Current CRAN status: OK: 13

Package Umpire

Current CRAN status: OK: 13

Version: 0.3.1
Check: package dependencies
Result: ERROR Package required but not available: ‘org.Hs.eg.db’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-arm64

Version: 0.3.1
Check: tests
Result: ERROR Running '01-testEdge.R' [12s] Running '02-testNode.R' [12s] Running '03-testGroup.R' [12s] Running '04-testAnchor.R' [12s] Running '05-testIgraph.R' [14s] Running '06-testCycle.R' [13s] Running '06-testShapes.R' [13s] Running '10-testKeggUtil.R' [23s] Running '11-testkgml.R' [33s] Running the tests in 'tests/10-testKeggUtil.R' failed. Complete output: > library(WayFindR) > ## input directly from file > xmlfile <- system.file("pathways/kegg_hsa00510.xml", package = "WayFindR") > > entries <- collectEntries(xmlfile, "one") Error in collectEntries(xmlfile, "one") : Entries: Bad replacement: 81, compound In addition: Warning message: In retrieve.PubChemInstance(object = list(result = list(), request_args = list( : 'object' encountered an error. Nothing to return. See error details in 'object'. Execution halted Flavor: r-oldrel-windows-x86_64