2beaaefec491bbb0cf355d62e748c09a *DESCRIPTION
8ae523388d9d5167474cc2d4feec4896 *NAMESPACE
56603f83b5c82fba3f21a7430087ad30 *NEWS.md
4026b4f48ea7373302eafe9758245aa7 *R/FullElevGapFunctions.R
f3c54c172c7f19924e6fdb29f2f45dfe *R/GPsInElevGaps.R
a3bd26df155eec85f13b9db68f8d91d7 *R/ProActive-package.R
fdaa116465a459c8b70b0d3004e1cc63 *R/ProActiveDetect.R
67829e7a7335f1d08e0199f0519c03c9 *R/bestMatchListFunctions.R
9ad45c6bff38f0f13dfb75060894bec0 *R/chunkingFunctions.R
b3a59aba15d3bbffe419008b83562758 *R/collectBestMatchInfo.R
c054a60b55fbb2b1e4dbed9a0bdac5a7 *R/geneAnnotationPlot.R
3c744ff850327b8949e426ee4c1f2776 *R/geneAnnotationSearch.R
822041d108f06a96b6703e27d1e9d721 *R/noPattern.R
a0122b81aa7e05d256d27b5b79a230a3 *R/partialElevGapFunctions.R
5b00a01c9c98234475c951266b2c0fd4 *R/patternBuilder.R
73fe00edecf8d0b871b7c226591bd8cc *R/patternMatcher.R
761bd58207a882542dea286e6b40768c *R/plotProActiveResults.R
f7add4db1cb2daf0f48a45388a566280 *R/reformatInputFunctions.R
d34bd4e5f4c8810cc27f5408cd8bbf12 *R/sampleGenomePileup.R
4774abad93c1a089fedfd39fc362a347 *R/sampleGenomegffTSV.R
fee3e7ac0fa7f4688b873d3b9e6038fd *R/sampleMetagenomePileup.R
f7aa612f66069a661c95555a6563cabc *R/sampleMetagenomeResults.R
90a0b54b18aed744e8c4e6689a596659 *R/sampleMetagenomegffTSV.R
d48871ccf5bc85038b10cf0fe5ddcfa0 *R/sysdata.rda
a6fa8d1e4fb147082b2eb68185289e08 *README.md
a2b3e5ba3c81dfeb400c191fa63ae883 *build/vignette.rds
42145a4f192f5ac684b0380c27e2c328 *data/sampleGenomePileup.rda
48730690f454ee892c2b6fb98e2debe0 *data/sampleGenomegffTSV.rda
76f36e532111fbebd614b91d94c82391 *data/sampleMetagenomePileup.rda
e764003f996ca42958ee8c8c8256bd27 *data/sampleMetagenomeResults.rda
c6f4744c67df7c63ba8e798c73814358 *data/sampleMetagenomegffTSV.rda
e23ee1311f991398bcaf7d3ed4a30627 *inst/doc/ProActiveVignette.R
a0ad2ad4684646dd79c3b6ae77f176b4 *inst/doc/ProActiveVignette.Rmd
8dfd1d9344acc2d53e7c6b34fec48d40 *inst/doc/ProActiveVignette.html
57793a38e69343488de0760449a2ae29 *inst/figures/ProActiveLogo.png
8f6e47d4c570eea747451c01d6236c74 *inst/script/GenerateSampleGenomePileup_gffTSV.txt
6f754bc72bfe531c44107e66aafef923 *inst/script/GenerateSampleMetagenomePileup_gffTSV.txt
6df5a20a029adc614be83aaa395d17cd *man/GPsInElevGaps.Rd
16d5749264e5536fd68214c123f662bd *man/ProActive-package.Rd
f21d2c2e47cacdc4bb207b42cdcb5749 *man/ProActiveDetect.Rd
7785572ae564015dbf2ee6179f446ac8 *man/changewindowSize.Rd
0026ec07f00f723a1a76403fe37c20e9 *man/classifSumm.Rd
5d1d88561a9a6e30f6895334983d752a *man/collectBestMatchInfo.Rd
b56b37cc84fc3942ac72fc3fd574bd0d *man/contigChunks.Rd
8a5cd9c2299c975db26fe647acae7d45 *man/elevOrGapClassif.Rd
e133c68839de4733977d63c7e863ced0 *man/figures/logo.png
acba1811f4ef69a8405e5ea13b273df1 *man/fullElevGap.Rd
586c2ef8d5609ef8f250c7832140a0cd *man/fullElevGapShrink.Rd
2a3c0e6bb365eafd4ba939c9440cf001 *man/geneAnnotationPlot.Rd
e6c27660c91f8893061af8d9c68c9ef4 *man/geneAnnotationSearch.Rd
53d6a110bdee23a7b65aef6741a5e3b1 *man/genomeChunks.Rd
a7b5cf57910097134ecccf02f1665545 *man/linkChunks.Rd
ba54ce19c57c338d78b40ceee78f549c *man/noPattern.Rd
ea7739f595fff31b679e3191c282cd49 *man/partialElevGap.Rd
e20487daa67ea0ec18b254a2c63b3516 *man/partialElevGapShrink.Rd
8c154c8bd6fd6956de1df5aaf8cd9ce4 *man/patternBuilder.Rd
a5d75aa415693407b12c59ab9d271065 *man/patternMatcher.Rd
09bcaf4c7d526b5bce5cfb6637ad8e7a *man/patternTranslator.Rd
0de03eb2c6870ee4722f950336046013 *man/pileupFormatter.Rd
555754aa24f25c24a27a90ae212bd8e5 *man/plotProActiveResults.Rd
5085a105cc389059e3e5fa4e5d04679a *man/removeNoPatterns.Rd
563b4f0f6ed556c5f61a925f3abc71bb *man/sampleGenomePileup.Rd
aaed864bcdef369d81ff0cc01e1b7b20 *man/sampleGenomegffTSV.Rd
972874bb91a2f98ca2033b2cee50e60d *man/sampleMetagenomePileup.Rd
4284d45ab4f938b2173ed120ca779649 *man/sampleMetagenomeResults.Rd
f8f87818e0315ae05fb1407e14e5307d *man/sampleMetagenomegffTSV.Rd
a34404b337abfadfc18d42e61f8bd8ca *tests/testthat.R
fadff41406a90c3b574f816d13217f14 *tests/testthat/Rplots.pdf
8dec827b4d312c75a5b7d3a3289eca54 *tests/testthat/test-testProActive.R
a0ad2ad4684646dd79c3b6ae77f176b4 *vignettes/ProActiveVignette.Rmd
