| aggregate | CalmrExperiment methods |
| aggregate-method | CalmrExperiment methods |
| AIC | CalmrFit methods |
| AIC-method | CalmrFit methods |
| BIC | CalmrFit methods |
| BIC-method | CalmrFit methods |
| CalmrDesign-class | S4 class for calmr designs |
| CalmrDesign-methods | CalmrDesign methods |
| CalmrExperiment-class | S4 class for calmr experiments. |
| CalmrExperiment-methods | CalmrExperiment methods |
| CalmrExperimentResult-class | S4 class for calmr experiment results |
| CalmrFit-class | S4 class for calmr Fit |
| CalmrFit-methods | CalmrFit methods |
| CalmrResult-class | S4 class for calmr results |
| CalmrResult-methods | CalmrResult methods |
| CalmrRSA-class | S4 class for calmr representational similarity analysis |
| CalmrRSA-methods | CalmrRSA methods |
| calmr_model_graph | Create a graph with calmr data |
| calmr_model_plot | Create a plot with calmr data |
| calmr_verbosity | Set verbosity options for calmr |
| compare_models | Run models given a set of parameters |
| design | CalmrExperiment methods |
| design-method | CalmrExperiment methods |
| experiences | CalmrExperiment methods |
| experiences-method | CalmrExperiment methods |
| experiences<- | CalmrExperiment methods |
| experiences<--method | CalmrExperiment methods |
| filter | CalmrExperiment methods |
| filter-method | CalmrExperiment methods |
| fit_model | Fit model to data |
| get_design | Get basic designs |
| get_graph_opts | Create a graph with calmr data |
| get_model | Model information functions |
| get_optimizer_opts | Get optimizer options |
| get_parameters | Get model parameters |
| get_plot_opts | Create a plot with calmr data |
| get_timings | Get timing design parameters |
| graph | CalmrExperiment methods |
| graph-method | CalmrExperiment methods |
| length-method | CalmrExperiment methods |
| make_experiment | Make CalmrExperiment |
| mapping | CalmrDesign methods |
| mapping-method | CalmrDesign methods |
| model_information | Model information functions |
| model_outputs | Model information functions |
| model_parameters | Model information functions |
| NLL | CalmrFit methods |
| NLL-method | CalmrFit methods |
| parameters | CalmrExperiment methods |
| parameters-method | CalmrExperiment methods |
| parameters<- | CalmrExperiment methods |
| parameters<--method | CalmrExperiment methods |
| parse | CalmrExperiment methods |
| parse-method | CalmrExperiment methods |
| parsed_results | CalmrExperiment methods |
| parsed_results-method | CalmrExperiment methods |
| parse_design | Parse design data.frame |
| patch_graphs | Create a graph with calmr data |
| patch_plots | Create a plot with calmr data |
| pati | Rat responses from Patittucci et al. 2016 |
| phase_parser | Parses a phase string |
| plot | CalmrExperiment methods |
| plot-method | CalmrExperiment methods |
| plot-method | CalmrRSA methods |
| plotting_functions | General plotting functions |
| plot_common_scale | Create a plot with calmr data |
| plot_targetted_complex_trials | General plotting functions |
| plot_targetted_tbins | General plotting functions |
| plot_targetted_trials | General plotting functions |
| plot_targetted_typed_trials | General plotting functions |
| plot_tbins | General plotting functions |
| plot_trials | General plotting functions |
| predict | CalmrFit methods |
| predict-method | CalmrFit methods |
| raw_results | CalmrExperiment methods |
| raw_results-method | CalmrExperiment methods |
| results | CalmrExperiment methods |
| results-method | CalmrExperiment methods |
| rsa | Perform representational similarity analysis |
| run_experiment | Run experiment |
| set_calmr_palette | Get/set the colour/fill palette for plots |
| set_reward_parameters | Set reward parameters for ANCCR model |
| show-method | CalmrDesign methods |
| show-method | CalmrExperiment methods |
| show-method | CalmrFit methods |
| show-method | CalmrRSA methods |
| show-method | CalmrResult methods |
| supported_families | Model information functions |
| supported_models | Model information functions |
| supported_optimizers | Model information functions |
| supported_plots | Model information functions |
| supported_timed_models | Model information functions |
| test | CalmrRSA methods |
| test-method | CalmrRSA methods |
| timings | CalmrExperiment methods |
| timings-method | CalmrExperiment methods |
| timings<- | CalmrExperiment methods |
| timings<--method | CalmrExperiment methods |
| trials | CalmrExperiment methods |
| trials-method | CalmrDesign methods |
| trials-method | CalmrExperiment methods |