An Interface for Microclimate Time Series Analysis

Documentation for package ‘KarsTS’ version 2.4.1

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An Interface for Microclimate Time Series Analysis

-- A --

aboutKTS	aboutKTS: opens information file about KarsTS version
aggregateKTS	aggregateKTS: creation of time series of aggregated values
anaSamPer	anaSamper: analyzing sampling periods and gaps
applyGap2TSer	applyGap2TSer: apply a gap set to a time series
applyTheiler	applyTheiler: apply Theiler's window
are2TsTimeCompatible	are2TsTimeCompatible: test time compatibility between two time series
areTsGapTimeCompatible	areTsGapTimeCompatible: tests time compatibility between a time series and a gap set
areTsRmTimeCompatible	areTsRmTimeCompatible: test time compatibility between a time series and a recurrence matrix
arimaKalman	arimaKalman: ARIMA + Kalman smoother
arimaXKalman	arimaXKalman: ARIMAX + Kalman smoother
assignMultiple	assignMultiple: assign multiple

-- B --

buttons1	buttons1: create the buttons corresponding to the Time Series Menu
buttons2	buttons2: create the buttons corresponding to the Gap Sets Menu
buttons3	buttons3: create the buttons corresponding to the Analysis Menu
buttons4	buttons4: create the buttons corresponding to the Plots Menu
buttons5	buttons5: create the buttons corresponding to the Filling Menu

-- C --

checkIfAny	checkIfAny: check if there are any data sets in the environment
checkIfAnyGapOrTs	checkIfAny: check if there are any time series or gap sets in the environment
checkIfAnyGapTs	checkIfAny: check if there are any time series and gap sets in the environment
checkIfAnyRm	checkIfAny: check if there is some recurrence matrix in the environment
checkIfAnyRmTs	checkIfAnyRmTs: check if there is some recurrence matrix and some time series in the environment
checkIfAnyTs	checkIfAnyTs: check if there is some time series in the environment
cleanEnvir	cleanEnvir: removes a list of variables from KTSEnv
compareVecVec	compareVecVec: compare the elements of two vectors
composeKTS	composeKTS: perform operations on time series
createChb	createChb: creates a check box on the main screen
createChbChb	createChbChb: two column check box
createChbEntry	createChbEntry: creates a check box with associated text entries
createCrossRM	createCrossRM: creates a cross recurrence matrix
createCrossRMPlot	createCrossRMPlot: creates a cross recurrence plot
createDistMatrix	createDistMatrix: creates distance matrix
createEachRb	createEachRb: creates a radiobutton on the main screen
createEntry	createChb: creates a text entry on the main screen
createFAN	createFAN: creates a fixed amount of neighbors (FAN) matrix.
createFANplot	createFANplot: creates a plot from a fixed amount of neighbors (FAN) recurrence matrix
createGapChb	createGapChb: creates a check box of gap sets
createGapRb	createGapRb: creates a radio button of gap sets
createJointRM	createJointRM: creates a joint recurrence matrix
createJointRMPlot	createJointRMPlot: creates a cross recurrence plot
createNote	createNote: creates a note on the input panel
createOK	createOK: creates the OK or NEXT button on the input panel
createRandGaps	createRandGaps: create random gaps in a time series
createRandName	createRandName: creates a random name
createRb	createRb: creates a radio button
createRmChb	createRmChb: creates a check box of recurrence matrices
createRmRb	createRmRb: creates a radiobutton of recurrence matrices
createSimpleRM	createSimpleRM: creates a recurrence matrix
createSimpleRMPlot	createSimpleRMPlot: creates a recurrence plot
createSpecGaps	createSpecGaps: creates a specific gap in a time series
createSubPanR4C1	createSubPanR4C1: creates the input panel on the main screen
createTITLE	createTITLE: create a title on the input panel
createTitle	createTitle: creates a title in the input panel
createTsChb	createTsChb: creates a check box of time series
createTsRb	createTsRb: creates a radiobutton of time series
cumuKTS	cumuKTS: creates a cumulated time series

-- D --

destroyMainScreen	A function to destroy KarsTS main screen
destroyWelcome	destroyWelcome: destroys KarsTS welcome screen
determinismKTS	determinismKTS: estimate determinism
diffKTS	diffKTS: calculate differences of a time series

-- E --

E1dAndE2d	E1dAndE2d: invariants E1(d) and E2(d)
embedData	embedData: embeds a time series
endingLines	endingLines: add three lines of asterisks on the output panel
exportall	exportall: exports all types of data sets

-- F --

fillWithTwins	fillWithTwins: fills missing values using twin points
findDateFormat	findDateFormat: finds the format of a set of dates
findTwins	findTwins: finds twin points in a recurrence matrix
fnnKTS	fnn: plots embedding dimendion vs false nearest neighbors
functToExport	functToExport: functions to export

-- G --

gamKTS	A function to fill values by means of a generalized additive model
gapCheckedTF	gapCheckedTF: identifies checked gap sets
gapDetect	gapDetect: identifies the gap sets currently loaded
gapForSelMethod	gapForSelMethod: gap set to fill
genGapExample	A function to generate a gap set example
genRmExample	A function to generate a recurrence matrix example
genTSExample	A function to generate an example time series
getClassEnvir	getClassEnvir: get objects of a class from an environment
getCoordsKTS	getCoordsKTS: get coordinates from a plot
getCRP	getCRP: gets the correlation probability of recurrence
getDelayCharTimes	getDelayCharTimes: transforms dates from character to numeric.
getFANRM2	getFANRM2: creates a fixed amount of neighbours (FAN) matrix via console.
getGapsAfterFill	getGapsAfterFill: get the remaining gaps
getMaxNegSlope	getMaxNegSlope: get the maximum negative slope
getMaxPosSlope	getMaxPosSlope: get the maximum negative slope
getNAsGaps	getNAsGaps: get the gaps in a time series
getNewGapsInd	A function to create random gaps
getOtherErrEstim	getOtherErrEstim: get some error estimates from a linear fit
getProTaos	getProTaos:calculate the probability of recurrence
getRecurrencePoints	A function to get recurrent points in a time series
getRollStatistics	getRollStatistics: get rolling statistics It is used internally
getSamPerTable	getSamPerTable: get sampling periods table
getSamPerTable.1Freq	getSamPerTable.1Freq: get sampling periods table (time series with one frequency)
getScreenSize	getScreenSize: gets the computer screen size
getStatistics	getStatistics: calculates the statistics of a time series
getUniqueSampPer	getUniqueSampPer: get unique sampling periods
goodnessFilling	goodnessFilling: estimate the goodness of the filling
groupDates	groupDates: groups dates
groupIndices	groupIndices: group indices

-- H --

histKTS

histKTS: plots histogram

-- I --

invariantsKTS	invariantsKTS: invariant plots
isTimeAlright	isTimeAlright: checks whether a set of dates fits KarsTS format

-- K --

KarsTS	KarsTS: launches KarsTS
KTSEnv	functToExport: functions to export

-- L --

laminarityKTS	laminarityKTS: estimate laminarity
linCorrKTS	linCorrKTS: linear correlation plot
linearityKTS	linearityKTS: linearity tests
loadAllTypes	loadAllTypes: load all types of data sets
loadKarsTSFonts	loadKarsTSFonts: load KarsTS fonts
loessKTS	loess: loess smoothing

-- M --

mainScreen	mainScreen: launches the main screen
makeGlobal	functToExport: functions to export
meanValue	meanValue: mean value filling
mergeTsOrGap	mergeTsOrGap: merges time series or gap sets
missForestKTS	missForestKTS: filling missing values with random forest algorithm
modeKTS	modeKTS: computes the mode
mutInf	mutInf: mutual information
mutualKTS	mutualKTS: plots the mutual information
myApplyVector	myApplyVector: apply type function
myLinModel	myLinModel: performs a linear fit
myScale	myScale: scaling function

-- N --

naApproxKTS	naApproxKTS: filling by linear interpolation
NAs4Resamp	NAs4Resamp: upsamples a time series.
naSplinesKTS	naSplinesKTS: filling by spline interpolation
normalityKTS	normalityKTS: normality tests

-- P --

packagesToImport	packagesToImport: packages to import to KarsTS
pcaKTS	pcaKTS: principal component analysis
plotTimeSeries	plotTimeSeries: plot time series

-- R --

readMultEntryvalues	readMultEntryvalues: verifies multiple entry values
refreshDataSetsList	refreshDataSetsList: refreshes KarsTS data set list
removeAllTypes	removeAllTypes: removes data sets
removeIfExists	removeIfExists: remove if exists
removePoints	removePoints: graphically remove points from a time series
renameAllTypes	renameAllTypes: rename all types of data sets
rmCheckedTF	rmCheckedTF: identifies checked recurrence matrices
rmDetect	rmDetect: identifies the recurrence matrices currently loaded
rmSlopeOutliers	rmSlopeOutliers: slope filter
rollStatisticsKTS	rollStatisticsKTS: rolling statistics
roundKTS	roundKTS: rounding
RPKTS	Recurrence of probability

-- S --

saveAllTypes	saveAllTypes: saves all types of data sets.
saveReport	saveReport: saves report
scaleKTS	scaleKTS: scale time series
scattTimeSeries	A function for plotting time series in the phase space
selectionGaps	selectionGaps: select gaps in a time series
selectionTS	selectionTS
separateEntry	separateEntry: separates and checks comma-separated entry values
setCorrectDate	setCorrectDate: verifies date entry and returns proper output
setwdKTS	setwdKTS: set working directory
showHelp	showHelp: shows KarsTS help
slopeOutliersBut	slopeOutliersBut: remove slope outliers
stationarityKTS	stationarityKTS: stationarity tests
statisticsKTS	statisticsKTS: calculates the statistics of one or more time series
stinemannKTS	stinemannKTS: filling by Stinemann's interpolation
stlplusKTS	stlplusKTS: loess seasonal decomposition

-- T --

theilerKTS	theilerKTS: apply Theiler's window via interface
tsCheckedTF	tsCheckedTF: identifies checked time series
tsDetect	tsDetect: identifies the time series currently loaded

-- V --

verifyCharEntry	verifyCharEntry: verify character entries
verifyDateEntry	verifyDateEntry: verify date entries
verifyIntEntry	verifyIntEntry: verify integer entries
verifyRealEntry	verifyRealEntry: verify character entries

-- W --

welcomeScreen	welcomeScreen: launches the welcome screen
windRoseKTS	windRoseKTS: wind rose
writeMethodSummary	writeMethodSummary: writes a summary of the filling method
writeMethodTitle	writeMethodTitle: writes a title on KarsTS output window