CRISPR-Based Salmonella Enterica Serotype Analyzer

Documentation for package ‘CSESA’ version 1.2.0

CSESA	CSESA (CRISPR-based Salmonella enterica Serotype Analyzer).
FindSerotype	Find the serotype based on the analysis of the new spacers.
GetAllNewSpacers	Get the new spacers from the molecular sequence and its reverse complement.
GetNewSpacer	Get the new spacer from the molecular sequence.
GetNewSpacerCode	Get the new spacer from the molecular sequence and map it to the code.
GetReverseComplement	Return the reverse complement of the sequence.
GetStr	Get the information string from the CSESA s3 object.
PCR	Get the CSESA obeject through the two sequence.
ReadInFile	Read the three types of input file.
WGS	Find the serotype based on the analysis of the new spacers.