Gapped-Kmer Support Vector Machine

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Documentation for package ‘gkmSVM’ version 0.83.0

• DESCRIPTION file.

Help Pages

gkmSVM-package	Gapped-Kmer Support Vector Machine
genNullSeqs	Generating GC/repeat matched randomly selected genomic sequences for the negative set
gkmSVM	Gapped-Kmer Support Vector Machine
gkmsvm_classify	Classifying(/scoring) new sequences using the gkmSVM model
gkmsvm_delta	Calculating deltaSVM scores
gkmsvm_kernel	Computing the kernel matrix
gkmsvm_train	Training the SVM model
gkmsvm_trainCV	Training the SVM model, using repeated CV to tune parameter C and plot ROC curves