| DNAseqtest-package | Generating and Testing DNA Sequences |
| artomat | Transforming 4^K Array to m \times K Matrix |
| Distance | Paralinear Distances |
| DNAseqtest | Generating and Testing DNA Sequences |
| Fmatrix | Joint Distribution for Two Matched Sequences |
| gn | Joint Distribution for K Matched Sequences |
| gn2 | Joint Distribution for K Matched Sequences (2) |
| gn3sim | Generating Random DNA Samples Using the Rambaut and Grassly Method |
| likelihood | Negative Log Likelihood Ratio |
| Ntml | Generating Samples from a Multinomial Distribution |
| Pt | Transition Probability Function |
| simapp | Generating Random DNA Samples Using Approximation Method |
| simemb | Generating Random DNA Samples Using Embedded Markov Chain |
| Smatrix | Symmetric Matrix S |
| TEST2 | Test for Symmetry of Matched DNA Sequences |
| TEST3 | Overall Test for Marginal Symmetry |