| gac | Test If Set Satisfies Generalized Adjustment Criterion (GAC) | 
| gAlgo-class | Class '"gAlgo"' | 
| gaussCItest | Test Conditional Independence of Gaussians via Fisher's Z | 
| GaussL0penIntScore-class | Class '"GaussL0penIntScore"' | 
| GaussL0penObsScore-class | Class '"GaussL0penObsScore"' | 
| GaussParDAG-class | Class '"GaussParDAG"' of Gaussian Causal Models | 
| gds | Greedy DAG Search to Estimate Markov Equivalence Class of DAG | 
| ges | Estimate the Markov equivalence class of a DAG using GES | 
| getGraph | Get the "graph" Part or Aspect of R Object | 
| getGraph-method | Get the "graph" Part or Aspect of R Object | 
| getGraph-methods | Get the "graph" Part or Aspect of R Object | 
| getNextSet | Iteration through a list of all combinations of choose(n,k) | 
| gies | Estimate Interventional Markov Equivalence Class of a DAG by GIES | 
| global.mle-method | Class '"GaussL0penIntScore"' | 
| global.mle-method | Class '"GaussL0penObsScore"' | 
| global.score-method | Class '"GaussL0penIntScore"' | 
| global.score-method | Class '"GaussL0penObsScore"' | 
| gmB | Graphical Model 5-Dim Binary Example Data | 
| gmD | Graphical Model Discrete 5-Dim Example Data | 
| gmG | Graphical Model 8-Dimensional Gaussian Example Data | 
| gmG8 | Graphical Model 8-Dimensional Gaussian Example Data | 
| gmI | Graphical Model 7-dim IDA Data Examples | 
| gmI7 | Graphical Model 7-dim IDA Data Examples | 
| gmInt | Graphical Model 8-Dimensional Interventional Gaussian Example Data | 
| gmL | Latent Variable 4-Dim Graphical Model Data Example | 
| gSquareBin | G square Test for (Conditional) Independence of Binary Variables | 
| gSquareDis | G square Test for (Conditional) Independence of Discrete Variables | 
| pag2anc | Reads off identifiable ancestors and non-ancestors from a directed PAG | 
| pag2conf | Reads off identifiable unconfounded node pairs from a directed PAG | 
| pag2edge | Reads off identifiable parents and non-parents from a directed PAG | 
| pag2magAM | Transform a PAG into a MAG in the Corresponding Markov Equivalence Class | 
| ParDAG-class | Class '"ParDAG"' of Parametric Causal Models | 
| pc | Estimate the Equivalence Class of a DAG using the PC Algorithm | 
| pc.cons.intern | Utility for conservative and majority rule in PC and FCI | 
| pcalg2dagitty | Transform the adjacency matrix from 'pcalg' into a 'dagitty' object | 
| pcAlgo | PC-Algorithm [OLD]: Estimate Skeleton or Equivalence Class of a DAG | 
| pcAlgo-class | Class "pcAlgo" of PC Algorithm Results, incl. Skeleton | 
| pcAlgo.Perfect | PC-Algorithm [OLD]: Estimate Skeleton or Equivalence Class of a DAG | 
| pcorOrder | Compute Partial Correlations | 
| pcSelect | PC-Select: Estimate subgraph around a response variable | 
| pcSelect.presel | Estimate Subgraph around a Response Variable using Preselection | 
| pdag2allDags | Enumerate All DAGs in a Markov Equivalence Class | 
| pdag2dag | Extend a Partially Directed Acyclic Graph (PDAG) to a DAG | 
| pdsep | Estimate Final Skeleton in the FCI algorithm | 
| plot-method | Class '"EssGraph"' | 
| plot-method | Class '"ParDAG"' of Parametric Causal Models | 
| plot-method | Class "fciAlgo" of FCI Algorithm Results | 
| plot-method | Class "pcAlgo" of PC Algorithm Results, incl. Skeleton | 
| plotAG | Plot partial ancestral graphs (PAG) | 
| plotSG | Plot the subgraph around a Specific Node in a Graph Object | 
| possAn | Find possible ancestors of given node(s). | 
| possDe | Find possible descendants of given node(s). | 
| possibleDe | [DEPRECATED] Find possible descendants on definite status paths. | 
| print.fciAlgo | Class "fciAlgo" of FCI Algorithm Results | 
| print.pcAlgo | Class "pcAlgo" of PC Algorithm Results, incl. Skeleton | 
| Score-class | Virtual Class "Score" | 
| searchAM | Search for certain nodes in a DAG/CPDAG/MAG/PAG | 
| shd | Compute Structural Hamming Distance (SHD) | 
| show-method | Class "fciAlgo" of FCI Algorithm Results | 
| show-method | Class "pcAlgo" of PC Algorithm Results, incl. Skeleton | 
| show.fci.amat | Types and Display of Adjacency Matrices in Package 'pcalg' | 
| show.pc.amat | Types and Display of Adjacency Matrices in Package 'pcalg' | 
| showAmat | Show Adjacency Matrix of pcAlgo object | 
| showEdgeList | Show Edge List of pcAlgo object | 
| simy | Estimate Interventional Markov Equivalence Class of a DAG | 
| skeleton | Estimate (Initial) Skeleton of a DAG using the PC / PC-Stable Algorithm | 
| summary-method | Class "fciAlgo" of FCI Algorithm Results | 
| summary-method | Class "pcAlgo" of PC Algorithm Results, incl. Skeleton |