Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model

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Documentation for package ‘lmeNBBayes’ version 1.3.1

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adjustPosDef Generate posterior samples from a flexible mixed effect negative binomial regression model.
colmeansd Generate posterior samples from a flexible mixed effect negative binomial regression model.
condProbCI The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
dqmix Estimate the random effect distribution of the flexible mixed effect negative binomial regression.
E.KN Generate posterior samples from a flexible mixed effect negative binomial regression model.
getDIC Compute the DIC given the output from 'lmeNBBayes'.
getM Generate posterior samples from a flexible mixed effect negative binomial regression model.
getS.StatInMed Generate samples from the flexible mixed-effect negative binomial distribution
index.b.each The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
index.batch.Bayes The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
index.YZ The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
int.M Generate posterior samples from a flexible mixed effect negative binomial regression model.
llk.FG_i Compute the DIC given the output from 'lmeNBBayes'.
lmeNBBayes Generate posterior samples from a flexible mixed effect negative binomial regression model.
lnpara Generate posterior samples from a flexible mixed effect negative binomial regression model.
newCat Generate posterior samples from a flexible mixed effect negative binomial regression model.
Nuniq Generate posterior samples from a flexible mixed effect negative binomial regression model.
piM Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotbeta Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotgamma Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotGs Generate posterior samples from a flexible mixed effect negative binomial regression model.
plotnbinom Generate posterior samples from a flexible mixed effect negative binomial regression model.
pointsgamma Generate posterior samples from a flexible mixed effect negative binomial regression model.
prIndex The main function to compute the point estimates and 95% credible intervals of the conditional probabilities Pr(Y[i,new+]>= y[i,new+]| Y[i,pre]=y[i,pre]) for multiple subjects.
repeatAsID Generate posterior samples from a flexible mixed effect negative binomial regression model.
slim Generate posterior samples from a flexible mixed effect negative binomial regression model.
useSamp Generate posterior samples from a flexible mixed effect negative binomial regression model.