| AMP_COAD | AMP_COAD data |
| A_example | A_example data |
| A_Matrix | A_Matrix data |
| B_example | B_example data |
| B_Matrix | B_Matrix data |
| dim-method | An S4 class to store the probabilities |
| discoversomaticInteractions | discoversomaticInteractions |
| getMutex | getMutex function |
| getMutexAB | getMutexAB function |
| getMutexGroup | getMutexGroup function |
| getPM | getPM function |
| PMatrix | An S4 class to store the probabilities |
| PMatrix-class | An S4 class to store the probabilities |
| PM_AMP_COAD | PM_AMP_COAD data |
| PM_COAD | PM_COAD data |
| TCGA_COAD | TCGA_COAD |
| [-method | An S4 class to store the probabilities |