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| AIF | Automatic Metabolite Annotation from LC-MS DIA experiments. |
| CE.isolation | Separation of MS/MS files with regards collision energy |
| elemental.formula | List from elemental formula |
| Filter_AIF | Automatic Metabolite Annotation from LC-MS DIA experiments. |
| FullMS | Processing and Annotation of LC-MS Full-Scan data |
| Isotopic | Preparation library Full-MS. |
| PeakGroup | Peak Grouping for multiple DIA files |
| PeakGroupMS1 | Peak Grouping for MS1 file |
| plot_EIC | Plot an Extracted Ion Chromatogram (EIC) |
| ScoresDIA | Statistical analysis for a pair of peak grouped metabolites from LC-MS/MS DIA analysis. |
| ScoresMS1 | Statistical Analysis for a pair of peaks annotated for a particular metabolite. |