| Bilagay | Data frame containing stable isotope values of Bilagay. |
| compareTwoDistributions | Function to compare two distributions and test a hypothesis, in a Bayesian context |
| credibilityIntervals | Plot credibility intervals and central tendency descriptor from posterior distributions of trophic position and/or alpha parameter |
| extractIsotopeData | Extract stable isotope data from a data frame |
| extractPredictiveData | Function to extract raw data from posterior predictive model-checking distributions |
| Finnish_Lakes | Data frame of food webs in Inari and Kilpis Lakes (Finland) |
| fromParallelTP | Function to extract raw data from parallel calculations of trophic position |
| generateTPData | A function to generate random stable isotope data for trophic position calculation |
| getPosteriorMode | Function to get mode from a posterior distribution |
| jagsBayesianModel | Returns a JAGS-based Bayesian model to use within tRophicPosition. |
| jagsOneBaseline | Defines a jags Bayesian model to fit a single baseline trophic position model |
| jagsTwoBaselines | Defines a jags Bayesian model to fit a two baselines trophic position model (without fractionation for C) |
| jagsTwoBaselinesFull | Defines a jags Bayesian model to fit a two baselines trophic position full model (with fractionation for C) |
| loadIsotopeData | Extract and load stable isotope data for selected consumers from a data frame |
| multiModelTP | Multiple model calculation of trophic position |
| multiSpeciesTP | Multiple species calculation of trophic position |
| Orestias | Named list containing stable isotope values of Orestias chungarensis |
| pairwiseComparisons | Function to perform pairwise comparisons between two or more posterior distributions |
| parametricTP | Parametric trophic position |
| plot.isotopeData | Plot stable isotope data (2 elements) with one or two baselines |
| plotMCMC | Internal function that plot a mcmc.list object. |
| plotTP | Function to plot a trophic position distribution |
| posteriorTP | Function to generate posterior samples of a trophic position JAGS model |
| Roach | Data frame of Roach in Lough Neagh |
| screenFoodWeb | Function that creates a biplot of a food web with stable isotope values (d13C and d15N) |
| screenIsotopeData | Function to plot and screen stable isotope data with one or more baselines. |
| simulateTDF | Simulate trophic discrimination factors |
| simulateTEF | Simulate trophic enrichment factors |
| summariseIsotopeData | Function that summarises a data frame containing stable isotope values (d13C and d15N) grouping by Species and FG columns |
| summary.isotopeData | Summary for stable isotope data |
| TDF | Trophic discrimination factors from bibliography |
| TEF | Trophic enrichment factors from bibliography |
| TPmodel | Function to create a JAGS-based Bayesian model to calculate trophic position |
| trophicDensityPlot | Function to plot posterior samples of trophic position estimates |
| Trout | Named list containing stable isotope values of Oncorhynchus mykiss |