Explore Temporal Signal of Molecular Phylogenies

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Documentation for package ‘shinyTempSignal’ version 0.0.3

Help Pages

dateNumeric Convert dates according to date format
dateType1 Method 1 for finding the date inside the label
dateType2 Method 2 for finding the date inside the label
dateType3 Method 3 for finding the date inside the label
getdivergence Calculating the divergence of sequences
MCC_FluA_H3_tree Example data: a tree of 76 H3 hemagglutinin gene sequences of a lineage containing swine and human influenza A viruses
meangroup Combining data from the same years
run_shinyTempSignal Run the Shiny Application