| mvMORPH-package | Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data |
| aicw | Akaike weights |
| ancestral | Estimation of traits ancestral states. |
| coef.mvgls | Extract multivariate gls (or ols) model coefficients |
| effectsize | Multivariate measure of association/effect size for objects of class "manova.gls" |
| EIC | Extended Information Criterion (EIC) to compare models fit with 'mvgls' (or 'mvols') by Maximum Likelihood (ML) or Penalized Likelihood (PL) |
| estim | Ancestral states reconstructions and missing value imputation with phylogenetic/time-series models |
| fitted.mvgls | Extract multivariate gls (or ols) model fitted values |
| GIC | Generalized Information Criterion (GIC) to compare models fit with 'mvgls' (or 'mvols') by Maximum Likelihood (ML) or Penalized Likelihood (PL) |
| halflife | The phylogenetic half-life for an Ornstein-Uhlenbeck process |
| LRT | Likelihood Ratio Test |
| manova.gls | Multivariate Analysis of Variance |
| mv.Precalc | Model parameterization for the various mvMORPH functions |
| mvBM | Multivariate Brownian Motion models of continuous traits evolution |
| mvEB | Multivariate Early Burst model of continuous traits evolution |
| mvgls | Fit linear model using Generalized Least Squares to multivariate (high-dimensional) data sets |
| mvgls.dfa | Discriminant Function Analysis (DFA) - also called Linear Discriminant Analysis (LDA) or Canonical Variate Analysis (CVA) - based on multivariate GLS (or OLS) model fit |
| mvgls.pca | Principal Component Analysis (PCA) based on GLS (or OLS) estimate of the traits variance-covariance matrix (possibly regularized) |
| mvLL | Multivariate (and univariate) algorithms for log-likelihood estimation of arbitrary covariance matrix/trees |
| mvMORPH | Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data |
| mvols | Fit linear model using Ordinary Least Squares to multivariate (high-dimensional) data sets |
| mvOU | Multivariate Ornstein-Uhlenbeck model of continuous traits evolution |
| mvOUTS | Multivariate continuous trait evolution for a stationary time series (Ornstein-Uhlenbeck model) |
| mvqqplot | Quantile-Quantile plots for multivariate models fit with 'mvgls' or 'mvols' |
| mvRWTS | Multivariate Brownian motion / Random Walk model of continuous traits evolution on time series |
| mvSHIFT | Multivariate change in mode of continuous trait evolution |
| mvSIM | Simulation of (multivariate) continuous traits on a phylogeny |
| pairwise.contrasts | Pairwise contrasts |
| pairwise.glh | Pairwise multivariate tests between levels of a factor |
| phyllostomid | Phylogeny and trait data for a sample of Phyllostomid bats |
| predict.mvgls | Predictions from (multivariate) gls or ols model fit |
| predict.mvgls.dfa | Predictions from Discriminant analysis conducted with a mvgls model fit |
| pruning | Pruning algorithm to compute the square root of the phylogenetic covariance matrix and its determinant. |
| residuals.mvgls | Extract gls (or ols) model residuals |
| stationary | The stationary variance of an Ornstein-Uhlenbeck process |
| vcov.mvgls | Calculate variance-covariance matrix for a fitted object of class 'mvgls' |