RNA Secondary Structure Module Mining, Comparison and Plotting

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Documentation for package ‘RNAsmc’ version 0.8.0

• DESCRIPTION file.

Help Pages

bulgeLoopsPlot	A function for bulge loops plotting
bulge_loop	Internal function for getting bulge loops in a RNA secondary structure
ct2dot	ct2dot
DataCluster1	A RNA secondary structure file containing structure information
DataCluster2	A RNA secondary structure file containing structure information
DataCluster3	A RNA secondary structure file containing structure information
DataCluster4	A RNA secondary structure file containing structure information
DataCompareStr1	A RNA secondary structure file containing structure information
DataCompareStr2	A RNA secondary structure file containing structure information
DataRNAstr	A RNA secondary structure file containing structure information
externalLoopsPlot	A function for bulge loops plotting
external_loop	Internal function for getting external loops in a RNA secondary structure
getCompare	Internal function for getting similarity score in a RNA secondary structure
getScore	Internal function for getting similarity score in a RNA secondary structure
getSubStr	Internal function for getting substructure information in a RNA secondary structure
hairpinLoopsPlot	A function for hairpin loops plotting
hairpin_loop	Internal function for getting hairpin loops
internalLoopsPlot	A function for internal loops plotting
internal_loop	Internal function for getting internal loops
multiBranchLoopsPlot	A function for multi-branch loops plotting
multi_branch_loop	Internal function for getting multi-branch loops
RNAcirPlot	function for plotting RNA secondary structure in a circos style
RNAstrCluster	A function for RNAs clustering by their structure similarites
RNAstrPlot	A function for whole RNA secondary structure plotting
stem	Internal function for getting stems
stemPlot	A function for stems plotting
strCompare	strCompare
strComparePlot	strComparePlot