| get.cdn | Get the cell differentiation network from a fitted Kalman Reaction Network. |
| get.fit | Fit the state-space model to a clonal tracking dataset |
| get.sim.trajectories | Simulate a clonal tracking dataset from a given cell differentiation network. |
| get.sMoments | Get the first two-order smoothing moments from a fitted Kalman Reaction Network. |
| get.sMoments.avg | Get the clone-average of the first two-order smoothing moments from a fitted Kalman Reaction Network. |
| nearestPD | Nearest Positive Definite Matrix |
| Y_CT | Clonal tracking data from clinical trials |
| Y_RM | Rhesus Macaque clonal tracking dataset |