Framework for Tick Population and Infection Modeling

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Documentation for package ‘IxPopDyMod’ version 0.2.0

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config Create a 'config' object
config_ex_1 Simple model configuration example
config_ex_2 Simple model configuration example using delays
constant_fun Constant function
density_fun Density dependent mortality
expo_fun Exponential function
feed_fun Probability of actively questing and then finding a host
find_n_feed Probability of finding a host and successfully feeding on it
get_pred_from_table Get a predictor from input data
graph_lifecycle Visualize transitions as a life cycle graph
graph_population_each_group Graph population size of each life stage over time
graph_population_overall_trend Graph overall trend in population
growth_rate Calculate multiplicative growth rate of population
host_example_config Configuration for showing how we can modify host community data
infect_example_config Configuration for showing infection dynamics
infect_fun Probability that a feeding tick becomes engorged infected or uninfected
ogden2005 Configuration for Ixodes scapularis population dynamics model from Ogden et al. 2005
ogden_feed_fun Probability of actively questing times constant host finding probability
read_config create a config object from a YAML file
run Run the model
run_all_configs Run the model for each config
snow_cover_fun Mortality as a function of whether there is a snow on the ground
temp_example_config Configuration for showing how we can modify climate data
vary_many_params Generate copies of a 'config' with all combinations of modified parameters
vary_param Generate copies of a 'config' with a modified parameter
winter_tick Configuration for winter tick population dynamics model
write_config Save a 'config' object as files