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| genedist | Chromosomal distribution of the genes in the selected geneset |
| genelist | A list of genes of rice |
| geneqtl | List of the selected genes along with their corresponding overlapped QTL |
| GeneSelect | Selection of informative geneset |
| GSAQ | Gene Set Analysis with Quantitative Trait Loci with gene sampling model |
| GSVQ | Gene Set Validation with QTL using Hyper-geometric test without gene sampling model |
| qtldist | QTL wise distribution of genes in the selected geneset |
| qtlhit | Computation of qtl-hit statistic for the selected gene set |
| qtl_salt | A list of salt responsive Quantitative Trait Loci of rice |
| rice_salt | Gene expression data of rice under salinity stress |
| totqtlhit | Computation of total number of qtl-hits found in the whole gene space |