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| afcSKAT | Allele Frequency Comparison Sequence Kernel Association Test |
| AssocAFC | Allele Frequency Comparison |
| cor.afc | AFC Correlation Example |
| geno.afc | AFC Genotype Example |
| kin.afc | AFC Kinship Example |
| maf.afc | AFC MAF Example |
| phenotype.afc | AFC Phenotype Example |
| Wcorrected | Corrected Chi Squared Test |
| weights.afc | AFC Weights Example |
| Wqls | W Quasi-Likelihood Score |