SPecies Association Analysis

Documentation for package ‘spaa’ version 0.2.2

spaa-package	SPecies Association Analysis
add.col	Add one column from A to B, according to one column of common name.
data2mat	Convert species list data to species matrix
datasample	community matrix example
deg2dec	Degree to decimal
dist2list	Convert distance matrix to pairwised list
freq.calc	Species relative frequency
geodist	Hight precision Great circle distance between two places
lab.mat	Convert vector of XY labels to label matrix
lgeodist	Low precision Great circle distance between two places
list2dist	Convert pairwise list to distance matrix
niche.overlap	Niche overlap between each pair of species
niche.overlap.boot	Boostrap of niche overlap
niche.overlap.boot.pair	Niche overlap boostrap utility function
niche.overlap.pair	Niche overlap between one pair of species.
niche.width	Niche width
plotlowertri	Plotting lower semi matrix
plotnetwork	Correlation network plot
sp.assoc	Total species association
sp.pair	Species association between each pair of species
spaa	SPecies Association Analysis
splist	species list used in function add.col()
sub.sp.matrix	Subset species matrix according to relative frequency
testdata	Example Data
turnover	Calculating species turnover
XYname	Generating vector of XY labels