A Permutation Based Test for Biomarker Discovery in Microbiome Data

Documentation for package ‘permubiome’ version 1.3.1

get.data	Parsing the data file.
normalize	Normalize the microbiome dataset prior to perform the permutation test.
optimize	Optimization for detection of features with larger variation between classes
permutation	Permutation-based non-parametric analysis to infer differential abundance of features between groups.
plots	Plotting the features with differential abundance.
size.effect	Executing estimation statistics based on bootstrap-coupled approach