Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

Documentation for package ‘otuSummary’ version 0.1.1

alphaDiversity	Calculate the alpha diversity indices
contrib	Contribution of rare/abundant biosphere to the total Bray-Curtis dissimilarity
matrixConvert	Convert lower triangular distance matrix into data frame
ordination	Quickly check the constrained or unconstrained ordination plot
otu4type	An example OTU table with samples and taxonomy in rows and otus in columns
otuCollap	collapse a OTU table at given level.
otumothur	OTU table generated from 8 lakes over 4 years
otuqiime	OTU table generated from 8 lakes over 4 years
otuReport	Summarize the community structure and abundance with OTU table
pbray	Partition the Bray-Curtis distance dissimilarity
rareBiosphere	Summarize different subgroups in the rare biosphere
subOTU	Subset a OTU table
typeConvert	Transpose the data frame if there is data type conversion.