Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files from 'Plumed'

Documentation for package ‘metadynminer3d’ version 0.0.1

acealanme3d	Hills from 30 ns metadynamics of AceAlaNme in water with three collective variable
feprof.minima3d	Calculate free energy profile for minima3d object
fes.hillsfile3d	Calculate 3D free energy surface by Bias Sum algorithm
fes2.hillsfile3d	Calculate 3D free energy surface by conventional algorithm
fesminima.fes3d	Find free energy minima in the fes3d object
head.hillsfile3d	Print first n lines of hillsfile3d
max.fes3d	Calculate maximum of 3D free energy surface
min.fes3d	Calculate minimum of 3D free energy surface
oneminimum.fes3d	Creates one ad hoc 3D free energy minimum for a fes object
plot.fes3d	Plot 3D free energy surface object
plot.hillsfile3d	Plot hillsfile3d object
plot.minima3d	Plot minima3d object
plotheights.hillsfile3d	Plot evolution of heights of hills in hillsfile3d object
print.fes3d	Print minimum and maximum of 3D free energy surface
print.hillsfile3d	Print hillsfile3d
print.minima3d	Print minima3d object
read.hills3d	Read 3D HILLS from Plumed
read.plumed3d	Read 3D free energy surface from PLUMED sum_hills
summary.fes3d	Print summary of 3D free energy surface
summary.hillsfile3d	Print summary for hillsfile3d
summary.minima3d	Print minima3d object summary
tail.hillsfile3d	Print last n lines of hillsfile3d