Generalized Linear Latent Variable Models

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Documentation for package ‘gllvm’ version 1.3.1

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AICc Corrected Akaike information criterion and number of observations
AICc.gllvm Corrected Akaike information criterion and number of observations
anova.gllvm Analysis Of Deviance for gllvm
coefplot Plot covariate coefficients and confidence intervals
coefplot.gllvm Plot covariate coefficients and confidence intervals
confint.gllvm Confidence intervals for model parameters
ecoCoefs Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
getLV Extract latent variables
getLV.gllvm Extract latent variables
getPredictErr Extract prediction errors for latent variables from gllvm object
getPredictErr.gllvm Extract prediction errors for latent variables from gllvm object
getResidualCor Extract residual correlations from gllvm object
getResidualCor.gllvm Extract residual correlations from gllvm object
getResidualCov Extract residual covariance matrix from gllvm object
getResidualCov.gllvm Extract residual covariance matrix from gllvm object
gllvm Generalized Linear Latent Variable Models
logLik.gllvm Log-likelihood of gllvm
microbialdata Microbial community data
nobs Corrected Akaike information criterion and number of observations
nobs.gllvm Corrected Akaike information criterion and number of observations
optima Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
optima.gllvm Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
ordiplot Plot latent variables from gllvm model
ordiplot.gllvm Plot latent variables from gllvm model
plot.gllvm Plot Diagnostics for an gllvm Object
predict Predict Method for gllvm Fits
predict.gllvm Predict Method for gllvm Fits
predictLVs Predict latent variables for gllvm Fits
predictLVs.gllvm Predict latent variables for gllvm Fits
print.summary.gllvm Summarizing gllvm model fits
randomCoefplot Plot random slope coefficients
randomCoefplot.gllvm Plot random slope coefficients
residuals.gllvm Dunn-Smyth residuals for gllvm model
se Standard errors for gllvm model
se.gllvm Standard errors for gllvm model
simulate Simulate data from gllvm fit
simulate.gllvm Simulate data from gllvm fit
summary.gllvm Summarizing gllvm model fits
tolerances Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
tolerances.gllvm Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
vcov Returns variance-covariance matrix of coefficients in a GLLVM.
vcov.gllvm Returns variance-covariance matrix of coefficients in a GLLVM.