![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| genomicper-package | Circular Genomic Permutations |
| demo | GWAS p_values demo data |
| genes_permutation | Gene-level Permutations |
| genome_order | Genome Order |
| genomicper | Circular Genomic Permutations |
| get_pathways | Pathways |
| get_results | Circular Permutation Results |
| hsa00100 | KEGG pathways examples |
| hsa00120 | KEGG pathways examples |
| hsa00130 | KEGG pathways examples |
| hsa00140 | KEGG pathways examples |
| hsa00190 | KEGG pathways examples |
| hsa02010 | KEGG pathways examples |
| hsaXXXXX | KEGG pathways examples |
| hyprbg | Hypergeometric Test (phyper) |
| plot_results | Plot Results Circular Permutation |
| read2_paths | Read to SNPs to sets; Map SNPs to gene-sets/pathways |
| read_pvals | Read GWAS p-values of association and Merge with SNP annotations |
| SNPsAnnotation | SNPs-Genes annotation to Distance 0 (SNPs within a gene) |
| snps_permutation | SNP-level permutations |