| genoPlotR-package | Plot Publication-Grade Gene and Genome Maps |
| annotation | Annotation class and class functions |
| apply_color_scheme | Apply a color scheme |
| artemisColors | Artemis Colors |
| as.annotation | Annotation class and class functions |
| as.comparison | Comparison class and class functions |
| as.dna_seg | DNA segment (dna_seg) class and class functions |
| as.seg_plot | seg_plot class and class functions |
| auto_annotate | Auto-annotate dna_segs |
| barto | Comparison of 4 Bartonella genomes |
| bbone | Mauve backbone of 4 Bartonella genomes |
| c.dna_seg | Concatenate dna_seg objects |
| chrY_subseg | Comparisons of subsegments of the Y chromosome in human and chimp |
| comparison | Comparison class and class functions |
| comparisons | Three genes data set |
| dna_seg | DNA segment (dna_seg) class and class functions |
| dna_segs | Three genes data set |
| gene_types | Gene types |
| genoPlotR | Plot Publication-Grade Gene and Genome Maps |
| human_nt | Human-readable nucleotide scale |
| is.annotation | Annotation class and class functions |
| is.comparison | Comparison class and class functions |
| is.dna_seg | DNA segment (dna_seg) class and class functions |
| is.seg_plot | seg_plot class and class functions |
| mauve_bbone | Mauve backbone of 4 Bartonella genomes |
| middle | Middles of a dna_seg |
| plot_gene_map | Plot gene and genome maps |
| range.annotation | Range calculation |
| range.comparison | Range calculation |
| range.dna_seg | Range calculation |
| read_comparison_from_blast | Reading functions |
| read_comparison_from_tab | Reading functions |
| read_dna_seg_from_embl | Reading functions |
| read_dna_seg_from_fasta | Reading functions |
| read_dna_seg_from_file | Reading functions |
| read_dna_seg_from_genbank | Reading functions |
| read_dna_seg_from_ptt | Reading functions |
| read_dna_seg_from_tab | Reading functions |
| read_functions | Reading functions |
| read_mauve_backbone | Reading functions |
| reverse | Reverse objects |
| reverse.comparison | Reverse objects |
| reverse.default | Reverse objects |
| reverse.dna_seg | Reverse objects |
| seg_plot | seg_plot class and class functions |
| three_genes | Three genes data set |
| trim | Trimming data frames or more complex objects with >= 2 numeric columns |
| trim.annotation | Trimming data frames or more complex objects with >= 2 numeric columns |
| trim.comparison | Trimming data frames or more complex objects with >= 2 numeric columns |
| trim.default | Trimming data frames or more complex objects with >= 2 numeric columns |
| trim.dna_seg | Trimming data frames or more complex objects with >= 2 numeric columns |
| trim.seg_plot | Trimming data frames or more complex objects with >= 2 numeric columns |