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| gRapfa-package | Models for discrete longitudinal data using APFA. |
| add.stats | Add attributes to an APFA |
| apfa2NS | APFA to node symbol array |
| BioFam | Biographical survey of family life states |
| contract.last.level | Contract last level |
| cross.validate | K - cross validation |
| dIC | Difference in information criteria |
| fit.APFA | Fitting an APFA igraph object to data |
| getXY | To get XY co-ordinates for the igraph plots. |
| gRapfa | Models for discrete longitudinal data using APFA. |
| KL | Kullback-Leibler divergence for APFA models |
| LogLike.APFA | Log likelihood for an APFA model |
| merge2nodes | Merge two nodes |
| MergeNodes | Merge given node set of an APFA |
| MergeSelect | Selection of nodes to merged at a level |
| mildew.raw | A cross between two isolates of the barley powdery Mildew fungus |
| select.beagle | Select APFA using Beagle |
| select.IC | Selection of APFA model using penalised likelihood criteria |
| simulateAPFA | Simulation of data from an APFA model |
| st | Sample tree |
| Wheeze | Wheeze in Steubenville children |