R Client Library for CloudOS

Documentation for package ‘cloudos’ version 0.3.0

.get_search_json	only used for v1 endpoint - creates v1 search json using the v2 style query
.v1_query_to_v2	Convert a v1 style query (moreFields) to v2 style (query). v2 queries are a superset of v1 queries. A list of v1 phenotype queries are equivalent to a set of nested v2 AND operators containing those phenotypes. This function builds the nested AND query from the flat list of v1 phenotypes.
cb_apply_query	Apply a query to a cohort
cb_create_cohort	Create Cohort
cb_get_genotypic_table	Get genotypic table
cb_get_participants_table	Get participant data table
cb_get_participants_table_long	Get longform participant data table
cb_get_phenotype_metadata	Phenotype metadata
cb_get_phenotype_statistics	Get distribution of a phenotype in a cohort
cb_list_cohorts	List cohorts
cb_load_cohort	Get cohort information
cb_participant_count	Participant Count
cb_plot_filters	Plot filters
cb_search_phenotypes	Search available phenotypes
cb_set_columns	Set the columns in a cohort
cloudos_configure	Configure cloudos
cloudos_whoami	whoami
cohort-class	cohort class
phenotype	Define a phenotype