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| emc | Parameter Estimation by EM Algorithm When the Male and Female Allele Frequencies Are the Same |
| emf | Parameter Estimation by EM Algorithm When the Male and Female Allele Frequencies Are Different |
| Likelihoodfun | Calculating log-Likelihood Function |
| ped | A Standard Linkage Pedigree File |
| result | Test Statistics, P Values and Parameter Estimation |
| XHWE | Likelihood Ratio Tests for Hardy-Weinberg Equilibrium (HWE) at SNP Markers on X Chromosome |