Spatial Convex Clustering

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Documentation for package ‘SpaCCr’ version 0.1.0

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CNVPlotSeriesMeans Plot subjects' copy number data with cluster means overlayed for a single chromosome
GetClusters Compute Clusters from fusions
GetGammaCV Get optimal cross validated gamma values by various rules
GetParBlocks Function to compute blocks for parallization; should not be called directly
hello Hello, World!
methy A subset of methylation data for 50 subjects
MethyRegionPlot Plots methylation data by Genomic Coordinates for a given chromosomal region with cluster means overlayed for each subject.
PlotCV A function for plotting cross validation errors
SpaCC Base function for computing SpaCC solution for single regularization value.
SpaCC_CV Perform Cross Validation to select gamma/sparsity level
SpaCC_Methy Performs Spatial Convex Clustering for methylation data
SpaCC_Missing Solve Spatial Convex Clustering problem for missing data
SpaCC_Path Solve Spatial Convex Clustering problem for path of regularization parameters
SpaCC_Path_Parallel Solve Spatial Convex Clustering problem for path of regularization parameters in parallel
ThreshV Threshold differences