| PRISMA-package | Protocol Inspection and State Machine Analysis |
| asap | The ASAP Data Set |
| corpusToPrisma | Convert tm copus to PRISMA |
| estimateDimension | Estimate Inner Dimension |
| getDuplicateData | Restores Data with Duplicates |
| getMatrixFactorizationLabels | Convert Coordinates of Matrix Factorization to Labels |
| loadPrismaData | Load PRISMA Data Files |
| plot.prisma | Generics For PRISMA Objects |
| plot.prismaDimension | Generics For PRISMA Objects |
| plot.prismaMF | Generics For PRISMA Objects |
| print.prisma | Generics For PRISMA Objects |
| print.prismaDimension | Generics For PRISMA Objects |
| PRISMA | Protocol Inspection and State Machine Analysis |
| prismaDuplicatePCA | Matrix Factorization Based on Replicate-Aware PCA |
| prismaHclust | Matrix Factorization Based on Hierarchical Clustering |
| prismaNMF | Matrix Factorization Based on Replicate-Aware NMF |
| thesis | The Thesis Data Set |