| manifest | Example Sample Manifest |
| npx_data1 | NPX Data in Long format |
| npx_data2 | NPX Data in Long format, Follow-up |
| olink_anova | Function which performs an ANOVA per protein |
| olink_anova_posthoc | Function which performs an ANOVA posthoc test per protein. |
| olink_boxplot | Function which plots boxplots of selected variables |
| olink_bridgeselector | Bridge selection function |
| olink_color_discrete | Olink color scale for discrete ggplots |
| olink_color_gradient | Olink color scale for continuous ggplots |
| olink_displayPlateDistributions | Plot distributions of a given variable for all plates |
| olink_displayPlateLayout | Plot all plates colored by a variable |
| olink_dist_plot | Function to plot the NPX distribution by panel |
| olink_fill_discrete | Olink fill scale for discrete ggplots |
| olink_fill_gradient | Olink fill scale for continuous ggplots |
| olink_lmer | Function which performs a linear mixed model per protein |
| olink_lmer_plot | Function which performs a point-range plot per protein on a linear mixed model |
| olink_lmer_posthoc | Function which performs a linear mixed model posthoc per protein. |
| olink_normalization | Normalization of all proteins (by OlinkID). |
| olink_pal | Olink color panel for plotting |
| olink_pca_plot | Function to plot a PCA of the data |
| olink_plate_randomizer | Randomly assign samples to plates |
| olink_qc_plot | Function to plot an overview of a sample cohort per Panel |
| olink_ttest | Function which performs a t-test per protein |
| olink_volcano_plot | Easy volcano plot with Olink theme |
| read_NPX | Function to read NPX data into long format |
| set_plot_theme | Function to set plot theme |