Functional Summary and Meta-Analysis of Gene Expression Data

[Up] [Top]

Documentation for package ‘KOGMWU’ version 1.2

Help Pages

KOGMWU-package Functional summary and meta-analysis of gene expression data
adults.3dHeat.logFoldChange Heat stress response of adult coral
corrPlot Plots a pairwise correlation with linear regression line
gene2kog KOG class annotations
kog.ft One-tailed Fisher's exact test for KOG enrichment.
kog.mwu Tests for KOG class enrichment.
kog.mwut Mann-Whitney U test for KOG enrichment.
KOGMWU Functional summary and meta-analysis of gene expression data
larvae.longTerm Long-term heat stress response of coral larvae
larvae.shortTerm Short-term heat stress response of coral larvae
makeDeltaRanksTable Make a combined delta-ranks table from several kog.mwu() results.
panel.cor accessory function for pairs() to display Pearson correlations
panel.cor.pval accessory function for pairs() to display pvalue of the Pearson correlation