| bgCorr | Background noise correction of expression data |
| findClusters | Identification of clusters with similar temporal regulation |
| findPeaks | Identification of peaks in an expression signal |
| getCormat | Identification of co-expressing genes |
| heat | Transcriptional profiles of human epithelial cells in response to heat |
| maProcessing | Pre-processing of microarray datasets |
| peakDetection | Identification of biomarkers specific to distinct phases of the underlying biological process |
| plotExpression | Plot the expression signal of individual genes |
| plotHeatmap | Plot a heatmap for selected genes |
| saveOutput | Save the peak detection output to a text file |