Community Dynamics Metrics

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Documentation for package ‘codyn’ version 2.0.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

codyn-package	Community Dynamics Metrics
abundance_change	Species Abundance Changes
abundance_difference	Abundance Differences
collins08	Konza data from Collins et al. 2008
community_diversity	Community Diversity
community_stability	Community Stability
community_structure	Community Structure
confint.cyclic_shift	Confidence Intervals from a Cyclic Shift Permutation
curve_change	Curve Change
curve_difference	Curve Difference
cyclic_shift	Cyclic Shift Permutations
knz_001d	Data from Konza Prairie, watershed 001d
mean_rank_shift	Mean Rank Shifts
multivariate_change	Using dissimilarity-based measures to calculate changes in composition and dispersion
multivariate_difference	Using dissimilarity-based measures to calculate differences in composition and dispersion between pairs of treatments at a single time point
pplots	Phosphorus plots data from Avolio et al. 2014
RAC_change	Rank Abundance Curve Changes
RAC_difference	Rank Abundance Curve Differences
rank_shift	Mean Rank Shifts
rate_change	Rate of community change over successive time intervals
rate_change_interval	Differences in community composition over successive time lag intervals
synchrony	Species synchrony
temporal_torus_translation	Cyclic Shift Permutations
turnover	Species Turnover
variance_ratio	Variance Ratio