Multivariate and Functional Spatial Scan Statistics

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Documentation for package ‘HDSpatialScan’ version 1.0.5

• DESCRIPTION file.

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HDSpatialScan-package	Multivariate and Functional Spatial Scan Statistics
clusters	Creation of the matrix of potential clusters
DFFSS	DFFSS scan procedure
dfree	Index for the UG scan procedure
dfree_index_multi	Index for the MDFFSS scan procedure
FinScan	Finalization of the scan procedures
fmulti_data	Multivariate functional data
funi_data	Univariate functional data
HDSpatialScan	Multivariate and Functional Spatial Scan Statistics
InitScan	Initalization of the scan procedures by creating the matrix of potential clusters
map_sites	Spatial object corresponding to the sites of the data of the package HDSpatialScan
MDFFSS	MDFFSS scan procedure
MG	MG scan procedure
MNP	MNP scan procedure
MPFSS	MPFSS scan procedure
MRBFSS	MRBFSS scan procedure
multi_data	Multivariate non-functional data
multi_fWMW	Index for the NPFSS scan procedure (multivariate functional case)
multi_gaussian	Index for the MG scan procedure
multi_signs_matrix	List of matrix of signs (multivariate functional data)
multi_WMW	Index for the MNP scan procedure
non_overlap	Return only the detected clusters with no overlapping in their order of detection
NPFSS	NPFSS scan procedure (univariate functional or multivariate functional)
permutate	Permutates the data
PFSS	PFSS scan procedure
plot.ResScanOutput	Schema or map of the clusters
plotCurves	Generic function to plot curves
plotCurves.ResScanOutputMultiFunct	Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotCurves.ResScanOutputUniFunct	Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)
plotSummary	Generic function to plot a summary
plotSummary.ResScanOutputMulti	Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)
plotSummary.ResScanOutputMultiFunct	Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotSummary.ResScanOutputUniFunct	Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)
plot_map	Map of circular clusters
plot_map2	Map of the clusters
plot_schema	Schema of the clusters
pointwise_dfree	Index for the DFFSS scan procedure
pointwise_wmw_multi	Index for the MRBFSS scan procedure
pointwise_wmw_uni	Index for the URBFSS scan procedure
post_filt_area	A posteriori filtering on the area
post_filt_nb_sites	A posteriori filtering on the number of sites/individuals
post_filt_radius	A posteriori filtering on the radius
print.ResScanOutput	Prints a result of a scan procedure
ResScanOutput	Constructor function for objects of the ResScanOutput class
ResScanOutputMulti	Constructor function for objects of the ResScanOutputMulti class
ResScanOutputMultiFunct	Constructor function for objects of the ResScanOutputMultiFunct class
ResScanOutputUni	Constructor function for objects of the ResScanOutputUni class
ResScanOutputUniFunct	Constructor function for objects of the ResScanOutputUniFunct class
SpatialScan	Spatial scan procedure
summary.ResScanOutputMulti	Summary of the clusters obtained with a multivariate scan function (MG or MNP).
summary.ResScanOutputMultiFunct	Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).
summary.ResScanOutputUni	Summary of the clusters obtained with a univariate scan function (UG or UNP).
summary.ResScanOutputUniFunct	Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).
transform_data	Computation of the multivariate functional ranks
UG	UG scan procedure
uni_fWMW	Index for the NPFSS scan procedure (univariate functional case)
uni_signs_matrix	Computation of the matrix of signs
UNP	UNP scan procedure
URBFSS	URBFSS scan procedure
wmw_uni	Index for the UNP scan procedure